Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_125.40

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_125.40
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 2A6H 1L9Z 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT5G13730.1 Score: 1

Chlorella sp. NC64A

35462 Score: 1

Coccomyxa sp. C-169

44246 Score: 1

Populus trichocarpa

202953 Score: 1

Vitis vinifera

GSVIVP00028718001 Score: 1

Expression data

Expressed Sequence Tags

At.49018
Arabidopsis thaliana sigma-like factor (MSH12.20) mRNA, complete cds /cds=p(89,892) /gb=AY059907

Domain Architecture

Sigma70_r2 PF04542 evm.TU.supercontig_125.40
DomainStartEndBit scoreE-value
Sigma70_r221028086.21.2e-22
Sigma70_r328436659.99.3e-15
Sigma70_r4378431745.6e-19

Sequences