Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_129.77

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_129.77
Family
BSD
3D structure (top 5)
1X3A
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT3G49800.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g52000.1 Score: 1

Physcomitrella patens

159259 Score: 1

Populus trichocarpa

571988 Score: 1

Sorghum bicolor

5053773 Score: 1

Carica papaya

evm.TU.supercontig_129.77 Score: 1
evm.TU.supercontig_142.54 Score: 1

Zea mays

GRMZM2G027535_P01 Score: 1
GRMZM2G027535_P02 Score: 1

Expression data

Expressed Sequence Tags

At.19658
Arabidopsis thaliana unknown protein (At5g65910) mRNA, complete cds /cds=p(120,1418) /gb=AY034931
At.751
Arabidopsis thaliana BSD domain-containing protein (AT3G49800) mRNA, complete cds /cds=p(68,1354) /gb=NM_114840
Hv.4460
HV_CEa0006F11f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0006F11f, mRNA sequence /clone=HV_CEa0006F11f /gb=BF263283
Os.12255
Oryza sativa Japonica Group cDNA clone:J033132M15, full insert sequence /cds=p(94,1287) /gb=AK103570
Os.34745
Oryza sativa Japonica Group cDNA clone:J023049A10, full insert sequence /gb=AK070308

Domain Architecture

BSD PF03909 evm.TU.supercontig_129.77
DomainStartEndBit scoreE-value
BSD19425473.58e-19

Sequences