Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_1379.1

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_1379.1
Family
HB
3D structure (top 5)
2R5Y 1PUF 1ZQ3 2HDD 1B8I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os08g37580.1 Score: 1

Physcomitrella patens

174493 Score: 1
6570 Score: 1

Carica papaya

evm.TU.supercontig_1379.1 Score: 1
evm.TU.supercontig_17.180 Score: 1

Populus trichocarpa

565244 Score: 1

Vitis vinifera

GSVIVP00028981001 Score: 1

Expression data

Expressed Sequence Tags

Mtr.1376
MTYEC08TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV260809
Pba.5346
WS02552.C21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_N08 3', mRNA sequence /clone=WS02552_N08 /clone_end=3' /gb=DT492913
Pba.6271
WS02544.B21_I09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_I09 3', mRNA sequence /clone=WS02544_I09 /clone_end=3' /gb=DT490278
Pth.17274
Populus trichocarpa clone WS0125_E07 unknown mRNA /cds=p(469,1413) /gb=EF147822
Pth.5346
WS02552.C21_N08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02552_N08 3', mRNA sequence /clone=WS02552_N08 /clone_end=3' /gb=DT492913
Vvi.4667
WIN0812.C21_D17 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_D17 3', mRNA sequence /clone=WIN0812_D17 /clone_end=3' /gb=EC961661

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_1379.1
DomainStartEndBit scoreE-value
Homeobox8413869.11.6e-17
HALZ13918365.91.5e-16

Sequences