Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_139.75

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_139.75
Family
PHD
3D structure (top 5)
2RNO 1WEW 1WEU
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

496189 Score: 1

Arabidopsis thaliana

AT5G60410.2 Score: 1.002
AT5G60410.1 Score: 1
AT5G60410.5 Score: 1
AT5G60410.4 Score: 0.96

Oryza sativa subsp. japonica

LOC_Os05g03430.2 Score: 1
LOC_Os05g03430.1 Score: 0.995

Physcomitrella patens

159214 Score: 1

Sorghum bicolor

4893760 Score: 1

Selaginella moellendorffii

93518 Score: 1

Vitis vinifera

GSVIVP00024500001 Score: 1

Zea mays

GRMZM2G155123_P02 Score: 1
GRMZM2G155123_P03 Score: 1

Expression data

Expressed Sequence Tags

At.43746
Arabidopsis thaliana SUMO E3 ligase (SIZ1) mRNA, complete cds /cds=p(240,2861) /gb=AY700572
Hv.17786
HO02A03S HO Hordeum vulgare cDNA clone HO02A03 5-PRIME, mRNA sequence /clone=HO02A03 /clone_end=5' /gb=CD054248
Mtr.12920
EST510425 HOGA Medicago truncatula cDNA clone pHOGA-23L12 5' end, mRNA sequence /clone=pHOGA-23L12 /clone_end=5' /gb=BG648806
Mtr.22469
EST645260 GPOD Medicago truncatula cDNA clone GPOD-34Z36, mRNA sequence /clone=GPOD-34Z36 /gb=CB066637
Pth.2061
Q056A07 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU873482

Domain Architecture

PHD PF00628 evm.TU.supercontig_139.75
DomainStartEndBit scoreE-value
PHD14620027.62.5e-05
zf-MIZ39144087.74.1e-23

Sequences