Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_14.19

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_14.19
Family
HB
3D structure (top 5)
1B8I 1NK2 2E1O 2CUE 2DMS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

896139 Score: 1

Arabidopsis thaliana

AT3G01220.1 Score: 1

Populus trichocarpa

259053 Score: 1

Expression data

Expressed Sequence Tags

At.23736
Arabidopsis thaliana homeodomain leucine-zipper protein ATHB13 mRNA, complete cds /cds=p(200,1084) /gb=AF208044
At.41313
Arabidopsis thaliana mRNA for putative homeobox-leucine zipper protein, complete cds, clone: RAFL16-20-K05 /cds=p(114,974) /gb=AK228890
At.49022
Arabidopsis thaliana mRNA for homeobox protein, complete cds, clone: RAFL16-61-C06 /cds=p(284,1228) /gb=AK229364
At.68137
987288 CERES-148 Arabidopsis thaliana cDNA clone 147623 3', mRNA sequence /clone=147623 /clone_end=3' /gb=DR380834
Hv.12185
BES1824102g23 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010G232 5-PRIME, mRNA sequence /clone=MPMGp2010G23102 /clone_end=5' /gb=CK122216
Mtr.15423
MTYEH21TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV261238
Mtr.17800
Medicago truncatula clone MTYF9_FA_FB_FC1G-H-4 unknown mRNA /cds=m(1,800) /gb=BT051961
Mtr.1797
EST646165 HOGA Medicago truncatula cDNA clone HOGA-27L15, mRNA sequence /clone=HOGA-27L15 /gb=CB893373
Os.59424
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN035D07, full insert sequence /gb=CT837907
Os.70514
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA049M06, full insert sequence /gb=CT837749
Pba.10856
WS02542.B21_K17 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_K17 3', mRNA sequence /clone=WS02542_K17 /clone_end=3' /gb=DT489599
Pth.10856
WS01227.B21.1_E04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01227_E04 3', mRNA sequence /clone=WS01227_E04 /clone_end=3' /gb=CV237288
Pth.12518
WS01224.B21.1_M07 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01224_M07 3', mRNA sequence /clone=WS01224_M07 /clone_end=3' /gb=CV236620

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_14.19
DomainStartEndBit scoreE-value
Homeobox7112572.51.5e-18
HALZ126170652.7e-16

Sequences