Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_1427.1

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_1427.1
Family
C3H
3D structure (top 5)
2RPP 3D2Q 2E5S 3D2N 1M9O
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

491837 Score: 1

Arabidopsis thaliana

AT4G29190.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g09620.1 Score: 1
LOC_Os01g09620.2 Score: 1

Populus trichocarpa

561711 Score: 1

Sorghum bicolor

5001311 Score: 1

Vitis vinifera

GSVIVP00032141001 Score: 1

Zea mays

GRMZM2G173124_P02 Score: 1

Expression data

Expressed Sequence Tags

At.12895
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT2G19810) mRNA, complete cds /cds=p(107,1186) /gb=NM_127539
At.4530
Arabidopsis thaliana unknown protein (At4g29190) mRNA, complete cds /cds=p(67,1137) /gb=AY045970
Mtr.11645
NF111B08PL1F1073 Phosphate starved leaf Medicago truncatula cDNA clone NF111B08PL 5', mRNA sequence /clone=NF111B08PL /clone_end=5' /gb=BI264045
Os.74292
Oryza sativa (japonica cultivar-group) Os03g0698800 (Os03g0698800) mRNA, complete cds /cds=p(596,2890) /gb=NM_001057517
Pth.2984
Populus trichocarpa clone WS01121_A14 unknown mRNA /cds=p(146,2278) /gb=EF145149
Pth.3311
Populus trichocarpa clone WS01117_K24 unknown mRNA /cds=p(46,1200) /gb=EF144742
Sbi.18549
PI1_57_C07.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence /gb=BE596523
Vvi.15454
CAP0004_IIIF_A11 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0004_IIIF_A11 5', mRNA sequence /clone=CAP0004_IIIF_A11 /clone_end=5' /gb=CF517032
Vvi.8567
CAbud0006_IIIR_B06 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0006_IIIR_B06 3', mRNA sequence /clone=CAbud0006_IIIR_B06 /clone_end=3' /gb=CF513322

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_1427.1
DomainStartEndBit scoreE-value
zf-CCCH224730.56.9e-06
zf-CCCH57790.31.4

Sequences