Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_144.6

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_144.6
Family
HB
3D structure (top 5)
1B8I 2CRA 1IG7 1NK2 2E1O
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

486694 Score: 1

Arabidopsis thaliana

AT2G46680.1 Score: 1
AT2G46680.2 Score: 0.971

Oryza sativa subsp. japonica

LOC_Os02g43330.1 Score: 1

Populus trichocarpa

572441 Score: 1
799128 Score: 1

Sorghum bicolor

5051514 Score: 1

Vitis vinifera

GSVIVP00026135001 Score: 1

Zea mays

GRMZM2G041462_P01 Score: 1

Expression data

Expressed Sequence Tags

At.25517
Arabidopsis thaliana ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 12); transcription factor (ATHB-12) mRNA, complete cds /cds=p(87,794) /gb=NM_116054
Mtr.12349
METAI06TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY475591
Pba.9224
WS02519.BR_K18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_K18 5', mRNA sequence /clone=WS02519_K18 /clone_end=5' /gb=DT477340
Pth.9224
M125D02 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU869042

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_144.6
DomainStartEndBit scoreE-value
Homeobox298466.31.1e-16
HALZ8512943.49.1e-10

Sequences