Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_157.43

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_157.43
Family
HSF
3D structure (top 5)
1HKS 3HTS 1I84
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

493513 Score: 1

Arabidopsis thaliana

AT4G13980.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g29340.1 Score: 1

Populus trichocarpa

597074 Score: 1

Sorghum bicolor

4756324 Score: 1

Zea mays

GRMZM2G179802_P01 Score: 1
GRMZM2G179802_P02 Score: 0.998

Expression data

Expressed Sequence Tags

At.4244
Arabidopsis thaliana AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5); DNA binding / transcription factor (AT-HSFA5) mRNA, complete cds /cds=p(68,1468) /gb=NM_117472
Hv.18901
HVSMEb0008B10f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEb0008B10f, mRNA sequence /clone=HVSMEb0008B10f /gb=BF628773
Mtr.12448
MTYDR37TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV259038
Pba.3590
F069P30.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F069P30 3', mRNA sequence /clone=F069P30 /clone_end=3' /gb=CK091278
Pth.11766
F069P67Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence /gb=BI136536
Pth.3590
F069P30.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F069P30 3', mRNA sequence /clone=F069P30 /clone_end=3' /gb=CK091278
Vvi.23635
S9B09290 Ripening Berries (VvS9) Vitis vinifera cDNA clone S9B09290, mRNA sequence /clone=S9B09290 /gb=EE101448

Domain Architecture

HSF_DNA-bind PF00447 evm.TU.supercontig_157.43
DomainStartEndBit scoreE-value
HSF_DNA-bind241901952.1e-55

Sequences