Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_16.111

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_16.111
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

58003 Score: 1

Micromonas sp. RCC299

63330 Score: 1

Expression data

Expressed Sequence Tags

At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
At.46725
Arabidopsis thaliana ATTLP9 (TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor (ATTLP9) mRNA, complete cds /cds=p(261,1403) /gb=NM_111513
Mtr.4196
MTGland_A059_2007-06-22/MTGlandA059_C03_014_1 Medicago truncatula A17 glandular trichome Medicago truncatula cDNA, mRNA sequence /gb=EX529819
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.61163
Oryza sativa Japonica Group cDNA clone:J033091L01, full insert sequence /cds=p(199,894) /gb=AK102370
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106

Domain Architecture

F-box PF00646 evm.TU.supercontig_16.111
DomainStartEndBit scoreE-value
F-box3387277.8e-05
Tub993283212.4e-93

Sequences