Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_162.51

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_162.51
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

334149 Score: 1

Arabidopsis thaliana

AT1G08620.1 Score: 1

Cyanidioschyzon merolae

CMT461C Score: 1

Oryza sativa subsp. japonica

LOC_Os05g10770.1 Score: 1

Populus trichocarpa

241426 Score: 1

Sorghum bicolor

4897240 Score: 1

Selaginella moellendorffii

170257 Score: 1

Vitis vinifera

GSVIVP00002226001 Score: 1

Zea mays

GRMZM2G156910_P02 Score: 1

Expression data

Expressed Sequence Tags

Hv.16169
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf124d14, mRNA sequence /gb=AK253132
Os.10868
Oryza sativa Japonica Group cDNA clone:J023127H13, full insert sequence /cds=p(200,3916) /gb=AK121381
Sbi.8331
RHOH1_36_H01.b3_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_36_H01_A002 3', mRNA sequence /clone=RHOH1_36_H01_A002 /clone_end=3' /gb=CN129603 /gi=45957447

Domain Architecture

JmjN PF02375 evm.TU.supercontig_162.51
DomainStartEndBit scoreE-value
JmjN21224569.31.4e-17
JmjC398515172.31.4e-48
zf-C5HC262267587.64.5e-23
FYRN1016106853.58.2e-13

Sequences