Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_1780.1

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_1780.1
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479964 Score: 1

Arabidopsis thaliana

AT3G24520.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g13800.1 Score: 1

Populus trichocarpa

261844 Score: 1

Sorghum bicolor

5061806 Score: 1

Vitis vinifera

GSVIVP00016746001 Score: 1

Zea mays

GRMZM2G089525_P01 Score: 1
GRMZM2G105348_P01 Score: 1
GRMZM2G167503_P01 Score: 1

Expression data

Expressed Sequence Tags

At.25607
Arabidopsis thaliana AT-HSFC1 (Arabidopsis thaliana heat shock transcription factor C1); DNA binding / transcription factor (AT-HSFC1) mRNA, complete cds /cds=p(390,1382) /gb=NM_113363
At.73128
AYAKP52TF pooled cDNA populations Arabidopsis thaliana cDNA, mRNA sequence /gb=EG418394
Hv.20818
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf61l22, mRNA sequence /gb=AK248538
Os.74142
Oryza sativa (japonica cultivar-group) Os06g0553100 (Os06g0553100) mRNA, complete cds /cds=p(1,837) /gb=NM_001064378
Vvi.12796
sT7aVVM015L11038 VVM Vitis vinifera cDNA clone VVM015L11038 5' similar to emb_CAN72162.1 hypothetical protein [Vitis vinifera]. Expect = 2e-115, mRNA sequence /clone=VVM015L11038 /clone_end=5' /gb=FC066410

Domain Architecture

HSF_DNA-bind PF00447 evm.TU.supercontig_1780.1
DomainStartEndBit scoreE-value
HSF_DNA-bind101661821.7e-51

Sequences