Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_18.209

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_18.209
Family
HB
3D structure (top 5)
1AU7 2CUF 2DMS 1FJL 2DA6
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

324546 Score: 1

Arabidopsis thaliana

AT4G00730.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g45250.1 Score: 1

Populus trichocarpa

774292 Score: 1

Vitis vinifera

GSVIVP00026236001 Score: 1

Zea mays

GRMZM2G049425_P01 Score: 1
GRMZM2G056368_P01 Score: 1
GRMZM2G116658_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19179
Arabidopsis thaliana homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (AT1G05230) mRNA, complete cds /cds=p(316,2481) /gb=NM_179265
At.21209
Arabidopsis thaliana HDG1 (HOMEODOMAIN GLABROUS1); DNA binding / transcription factor (HDG1) mRNA, complete cds /cds=p(162,2588) /gb=NM_115979
At.24442
Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2) (ANL2) mRNA, complete cds /cds=p(406,2118) /gb=NM_001125435
At.2706
Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding (ATML1) mRNA, complete cds /cds=p(467,2755) /gb=NM_001036615
At.4047
Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor (PDF2) mRNA, complete cds /cds=p(449,2680) /gb=NM_116727
At.55500
Arabidopsis thaliana HDG7 (HOMEODOMAIN GLABROUS7); DNA binding / sequence-specific DNA binding / transcription factor (HDG7) mRNA, complete cds /cds=p(1,2049) /gb=NM_124596
Hv.26642
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence /gb=AK249246
Mtr.14899
MTGland_A046_2007-06-01/MTGlandA046__B04_015_1 Medicago truncatula A17 glandular trichome Medicago truncatula cDNA, mRNA sequence /gb=EX528797
Os.11988
Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence /gb=AK120496
Os.12432
Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds /cds=p(260,2611) /gb=AB101645
Os.20576
Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence /gb=AK318563
Os.6039
Oryza sativa Japonica Group cDNA clone:J013045A10, full insert sequence /gb=AK111544
Os.8833
Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence /gb=AK112099

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_18.209
DomainStartEndBit scoreE-value
Homeobox12017686.87.8e-23
START333557309.47.7e-90

Sequences