Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_19.94

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_19.94
Family
LOB

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

483104 Score: 1

Arabidopsis thaliana

AT2G40470.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g60960.1 Score: 1

Populus trichocarpa

424396 Score: 1

Sorghum bicolor

126245 Score: 1

Vitis vinifera

GSVIVP00029404001 Score: 1

Zea mays

GRMZM2G092517_P01 Score: 1

Expression data

Expressed Sequence Tags

At.12242
Arabidopsis thaliana LBD13 (LOB DOMAIN-CONTAINING PROTEIN 13) (LBD13) mRNA, complete cds /cds=p(43,849) /gb=NM_179810
At.27426
Arabidopsis thaliana LOB DOMAIN 15 (LBD15) mRNA, complete cds /cds=p(107,781) /gb=AF447889
Os.42531
Oryza sativa Japonica Group cDNA clone:J033106D14, full insert sequence /cds=p(173,928) /gb=AK121919
Ppa.18595
BY954111 ppls full-length cDNA library Physcomitrella patens subsp. patens cDNA clone PPLS040C03 5', mRNA sequence /clone=PPLS040C03 /clone_end=5' /gb=BY954111
Vvi.10549
CAST0001_IR_E02 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0001_IR_E02 3', mRNA sequence /clone=CAST0001_IR_E02 /clone_end=3' /gb=CF215250
Vvi.19954
WIN015.BR_M20 Cab Sauv pericarp non-normalized (WIN01) Vitis vinifera cDNA clone WIN015_M20 5', mRNA sequence /clone=WIN015_M20 /clone_end=5' /gb=EC919967

Domain Architecture

DUF260 PF03195 evm.TU.supercontig_19.94
DomainStartEndBit scoreE-value
DUF26044144232.97.8e-67

Sequences