Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_192.6

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_192.6
Family
LOB

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

313993 Score: 1

Arabidopsis thaliana

AT1G31320.1 Score: 1

Populus trichocarpa

814988 Score: 1

Vitis vinifera

GSVIVP00035531001 Score: 1

Expression data

Expressed Sequence Tags

At.38397
Arabidopsis thaliana ASL5 (phosphoenolpyruvate carboxykinase1) (ASL5) mRNA, complete cds /cds=p(111,692) /gb=NM_128568
At.49305
Arabidopsis thaliana ASL9/LBD3 (LOB DOMAIN-CONTAINING PROTEIN 3) (ASL9/LBD3) mRNA, complete cds /cds=p(45,542) /gb=NM_101518
At.49931
Arabidopsis thaliana LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) (LBD4) mRNA, complete cds /cds=p(91,609) /gb=NM_102870
Mtr.22746
Medicago truncatula clone MTYF9_FA_FB_FC1G-F-14 unknown mRNA /cds=p(106,585) /gb=BT052161
Os.86465
Oryza sativa (japonica cultivar-group) Os05g0346800 (Os05g0346800) mRNA, complete cds /cds=p(1,603) /gb=NM_001061799
Pba.832
WS02542.B21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_N20 3', mRNA sequence /clone=WS02542_N20 /clone_end=3' /gb=DT489669
Pth.832
WS02542.B21_N20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_N20 3', mRNA sequence /clone=WS02542_N20 /clone_end=3' /gb=DT489669
Ptp.154
A001P63.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A001P63 3', mRNA sequence /clone=A001P63 /clone_end=3' /gb=CK087262
Ptp.7390
N043B08.5pR Populus bark cDNA library Populus tremula x Populus tremuloides cDNA clone N043B08 5', mRNA sequence /clone=N043B08 /clone_end=5' /gb=DN495416
Vvi.15143
CGF1000813_B12 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0007_IVF_B12 5', mRNA sequence /clone=CAST0007_IVF_B12 /clone_end=5' /gb=CF214152
Vvi.21409
WIN1127.C21_D09 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D09 3', mRNA sequence /clone=WIN1127_D09 /clone_end=3' /gb=EC986265

Domain Architecture

DUF260 PF03195 evm.TU.supercontig_192.6
DomainStartEndBit scoreE-value
DUF26013113244.82.1e-70

Sequences