Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_195.40

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_195.40
Family
HB
3D structure (top 5)
1B72 1PUF 1DU6 2DMN 1X2N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.14305
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH89ZE03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX820985
At.23033
Arabidopsis thaliana BLH1 (embryo sac development arrest 29) (BLH1) mRNA, complete cds /cds=p(544,2586) /gb=NM_001036413
At.74048
Arabidopsis thaliana BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor (BLH7) mRNA, complete cds /cds=p(548,1996) /gb=NM_127194
Hv.12894
HVSMEg0016O14f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0016O14f, mRNA sequence /clone=HVSMEg0016O14f /gb=BG344928
Mtr.13534
NF004E06ST1F1000 Developing stem Medicago truncatula cDNA clone NF004E06ST 5', mRNA sequence /clone=NF004E06ST /clone_end=5' /gb=AW688195
Mtr.22349
META209TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474128
Os.11805
Oryza sativa (japonica cultivar-group) Os11g0158600 (Os11g0158600) mRNA, complete cds /cds=p(1,1278) /gb=NM_001072340
Os.21068
Oryza sativa Japonica Group cDNA clone:J013104D06, full insert sequence /gb=AK099829
Os.27423
Oryza sativa Japonica Group cDNA clone:J023014M03, full insert sequence /gb=AK120813
Os.6492
Oryza sativa Japonica Group cDNA clone:J023054P21, full insert sequence /cds=p(789,2732) /gb=AK070465
Os.7976
Oryza sativa Japonica Group cDNA clone:J023057H24, full insert sequence /gb=AK070543
Sbi.1439
WOUND1_26_C01.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_26_C01_A002 5', mRNA sequence /clone=WOUND1_26_C01_A002 /clone_end=5' /gb=CN145056 /gi=45983936
Vvi.6621
CAP0005_IF_G01 Vitis vinifera cv. cabernet sauvignon (Clone 8) Petiole - CAP Vitis vinifera cDNA clone CAP0005_IF_G01 5', mRNA sequence /clone=CAP0005_IF_G01 /clone_end=5' /gb=CF517798

Domain Architecture

POX PF07526 evm.TU.supercontig_195.40
DomainStartEndBit scoreE-value
POX177318203.46e-58
Homeobox3764344.10.0048

Sequences