Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_198.18

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_198.18
Family
HB
3D structure (top 5)
1FJL 1B8I 1NK2 2R5Y 1PUF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.15827
Arabidopsis thaliana At1g17920/F2H15_22 mRNA, complete cds /cds=p(350,1570) /gb=AF424554
At.19179
Arabidopsis thaliana homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (AT1G05230) mRNA, complete cds /cds=p(316,2481) /gb=NM_179265
At.21209
Arabidopsis thaliana HDG1 (HOMEODOMAIN GLABROUS1); DNA binding / transcription factor (HDG1) mRNA, complete cds /cds=p(162,2588) /gb=NM_115979
At.24442
Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2) (ANL2) mRNA, complete cds /cds=p(406,2118) /gb=NM_001125435
At.2706
Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding (ATML1) mRNA, complete cds /cds=p(467,2755) /gb=NM_001036615
At.34997
Arabidopsis thaliana HDG11 (HOMEODOMAIN GLABROUS11); DNA binding / transcription factor (HDG11) mRNA, complete cds /cds=p(702,2870) /gb=NM_105996
At.4047
Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor (PDF2) mRNA, complete cds /cds=p(449,2680) /gb=NM_116727
At.55500
Arabidopsis thaliana HDG7 (HOMEODOMAIN GLABROUS7); DNA binding / sequence-specific DNA binding / transcription factor (HDG7) mRNA, complete cds /cds=p(1,2049) /gb=NM_124596
Hv.26642
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence /gb=AK249246
Mtr.4053
EST5313281 GESD Medicago truncatula cDNA clone pGESD13K7 5' end, mRNA sequence /clone=pGESD13K7 /clone_end=5' /gb=BI311531
Os.11988
Oryza sativa Japonica Group cDNA clone:J013120I03, full insert sequence /gb=AK120496
Os.12432
Oryza sativa Japonica Group Roc2 mRNA for GL2-type homeodomain protein, complete cds /cds=p(260,2611) /gb=AB101645
Os.18549
Oryza sativa Japonica Group cDNA clone:J013087I01, full insert sequence /gb=AK071939
Os.20576
Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence /gb=AK318563
Os.57414
Oryza sativa Japonica Group cDNA clone:J013040J18, full insert sequence /gb=AK071877
Os.6039
Oryza sativa Japonica Group cDNA clone:J013045A10, full insert sequence /gb=AK111544
Os.8833
Oryza sativa Japonica Group cDNA clone:002-108-E06, full insert sequence /gb=AK112099
Vvi.11868
WIN1121.C21_M07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1121_M07 3', mRNA sequence /clone=WIN1121_M07 /clone_end=3' /gb=EC984389
Vvi.11959
VVC064F05_230730 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC064F05 5, mRNA sequence /clone=VVC064F05 /clone_end=5' /gb=CB009164

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_198.18
DomainStartEndBit scoreE-value
Homeobox58114776.8e-20

Sequences