Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_2.158

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_2.158
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

876867 Score: 1

Arabidopsis thaliana

AT1G67970.1 Score: 1

Populus trichocarpa

820699 Score: 1

Vitis vinifera

GSVIVP00030611001 Score: 1

Expression data

Expressed Sequence Tags

At.5971
Arabidopsis thaliana ATHSFA1E (Arabidopsis thaliana heat shock transcription factor A1E); DNA binding / transcription factor (ATHSFA1E) mRNA, complete cds /cds=p(143,1549) /gb=NM_111169
At.5972
Arabidopsis thaliana AT-HSFA8 (Arabidopsis thaliana heat shock transcription factor A8); DNA binding / transcription factor (AT-HSFA8) mRNA, complete cds /cds=p(150,1274) /gb=NM_105467
Mtr.10306
NF067D12STT1F110 Developing stem Medicago truncatula cDNA clone NF067D12ST 5', mRNA sequence /clone=NF067D12ST /clone_end=5' /gb=BQ137105
Mtr.22152
NF106H11DT1F1094 Drought Medicago truncatula cDNA clone NF106H11DT 5', mRNA sequence /clone=NF106H11DT /clone_end=5' /gb=BF636270
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.9383
Populus trichocarpa clone WS01230_L11 unknown mRNA /cds=p(80,1258) /gb=EF147413

Domain Architecture

HSF_DNA-bind PF00447 evm.TU.supercontig_2.158
DomainStartEndBit scoreE-value
HSF_DNA-bind13188210.54.5e-60

Sequences