Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_2092.1

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_2092.1
Family
MYB-related
3D structure (top 5)
1IRZ 2ELK 2CU7 2YUS 1X41
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479087 Score: 1

Arabidopsis thaliana

AT3G16350.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g09280.1 Score: 1

Populus trichocarpa

645998 Score: 1

Sorghum bicolor

5052516 Score: 1

Vitis vinifera

GSVIVP00034313001 Score: 1

Zea mays

GRMZM2G099919_P01 Score: 1

Expression data

Expressed Sequence Tags

At.35354
Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-29-L19 /cds=p(63,848) /gb=AK227711
At.47678
Arabidopsis thaliana myb family transcription factor (AT3G16350) mRNA, complete cds /cds=p(111,1274) /gb=NM_112506
Hv.6265
Hordeum vulgare mRNA for MYBSt1 protein /cds=p(1,945) /gb=AJ965496
Mtr.14074
EST1226559 MTY Medicago truncatula cDNA clone MTYAV63, mRNA sequence /clone=MTYAV63 /gb=DW017598
Mtr.16497
EST1227431 MTY Medicago truncatula cDNA clone MTYB701, mRNA sequence /clone=MTYB701 /gb=DW018470
Mtr.3679
EST1224491 MTY Medicago truncatula cDNA clone MTYA640, mRNA sequence /clone=MTYA640 /gb=DW015530
Os.11458
Oryza sativa Japonica Group clone KCB704E08 myb transcription factor mRNA, complete cds /cds=p(38,1189) /gb=EU837252
Os.3818
Oryza sativa Japonica Group cDNA clone:J023105I20, full insert sequence /cds=p(121,1221) /gb=AK071611
Pba.10630
WS02519.B21_J04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_J04 3', mRNA sequence /clone=WS02519_J04 /clone_end=3' /gb=DT482346
Pth.10577
Populus trichocarpa clone WS01230_F05 unknown mRNA /cds=p(116,1054) /gb=EF147391
Pth.10630
WS02519.B21_J04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_J04 3', mRNA sequence /clone=WS02519_J04 /clone_end=3' /gb=DT482346
Sbi.10737
ABA1_30_C02.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_30_C02_A012 5', mRNA sequence /clone=ABA1_30_C02_A012 /clone_end=5' /gb=CB925970 /gi=30162241
Vvi.1267
VV_PEd0010c02.g1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV239979
Vvi.8774
CAST0001_IF_A06 Vitis vinifera cv. cabernet sauvignon Stem - CAST Vitis vinifera cDNA clone CAST0001_IF_A06 5', mRNA sequence /clone=CAST0001_IF_A06 /clone_end=5' /gb=CF214804

Domain Architecture

Myb_DNA-binding PF00249 evm.TU.supercontig_2092.1
DomainStartEndBit scoreE-value
Myb_DNA-binding10815543.96.1e-10

Sequences