Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_21.193

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_21.193
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

551319 Score: 1

Expression data

Expressed Sequence Tags

At.11339
Arabidopsis thaliana AtTLP5 (TUBBY LIKE PROTEIN 5); phosphoric diester hydrolase/ transcription factor (AtTLP5) mRNA, complete cds /cds=p(121,1410) /gb=NM_103489
At.23717
Arabidopsis thaliana AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor (AtTLP10) mRNA, complete cds /cds=p(578,1915) /gb=NM_102338
Hv.11650
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf148o16, mRNA sequence /gb=AK252121
Mtr.1961
EST647354 HOGA Medicago truncatula cDNA clone HOGA-31J3, mRNA sequence /clone=HOGA-31J3 /gb=CB894562
Mtr.3181
AC3425 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY617437
Os.12718
Oryza sativa Japonica Group cDNA clone:J033089L13, full insert sequence /gb=AK102298
Os.15216
Oryza sativa Japonica Group cDNA clone:J033133A18, full insert sequence /cds=p(348,1685) /gb=AK103583
Os.17428
Oryza sativa Japonica Group cDNA clone:J023042K06, full insert sequence /cds=p(797,1750) /gb=AK070139
Os.18696
Oryza sativa Japonica Group cDNA clone:J033087L15, full insert sequence /gb=AK102221
Os.19114
Oryza sativa Japonica Group cDNA clone:J013023N16, full insert sequence /gb=AK098928
Os.27120
Oryza sativa Japonica Group cDNA clone:J023001B21, full insert sequence /gb=AK120706
Pba.10911
WS01225.BR.1_P03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01225_P03 5', mRNA sequence /clone=WS01225_P03 /clone_end=5' /gb=DT472236
Pba.2529
WS02544.B21_N09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_N09 3', mRNA sequence /clone=WS02544_N09 /clone_end=3' /gb=DT490389
Pba.4669
WS0128.B21.1_M05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0128_M05 3', mRNA sequence /clone=WS0128_M05 /clone_end=3' /gb=CV238946
Pth.17601
WS02544.B21_N09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02544_N09 3', mRNA sequence /clone=WS02544_N09 /clone_end=3' /gb=DT490389
Pth.4669
Populus trichocarpa clone WS0115_J02 unknown mRNA /cds=p(226,1497) /gb=EF146106
Sbi.2307
RHOH1_7_G12.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_7_G12_A002 3', mRNA sequence /clone=RHOH1_7_G12_A002 /clone_end=3' /gb=CN124860 /gi=45948714
Vvi.12586
S6B04209 Fruits 7-9 mm (VvS6) Vitis vinifera cDNA clone S6B04209, mRNA sequence /clone=S6B04209 /gb=EE089175
Vvi.14168
CAB20001_Ia_Ra_F01 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20001_Ia_Ra_F01 3', mRNA sequence /clone=CAB20001_Ia_Ra_F01 /clone_end=3' /gb=CF207573

Domain Architecture

Tub PF01167 evm.TU.supercontig_21.193
DomainStartEndBit scoreE-value
Tub5265167.93e-47
F-box51106260.00015

Sequences