Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_211.13

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_211.13
Family
C3H
3D structure (top 5)
2E5G 1WF0 3D2W 2JWN 2CPF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480130 Score: 1

Arabidopsis thaliana

AT2G05160.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g03310.1 Score: 1
LOC_Os08g03310.2 Score: 1
LOC_Os08g03310.6 Score: 1
LOC_Os08g03310.3 Score: 0.916
LOC_Os08g03310.4 Score: 0.916
LOC_Os08g03310.5 Score: 0.907

Physcomitrella patens

137259 Score: 1

Populus trichocarpa

732453 Score: 1

Vitis vinifera

GSVIVP00029141001 Score: 1

Zea mays

GRMZM2G148090_P01 Score: 1

Expression data

Expressed Sequence Tags

At.41216
Arabidopsis thaliana zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (AT2G05160) mRNA, complete cds /cds=p(1,1611) /gb=NM_126543
At.53909
Arabidopsis thaliana RNA recognition motif (RRM)-containing protein (AT3G52980) mRNA, complete cds /cds=p(1,1146) /gb=NM_115158
Os.23145
Oryza sativa Japonica Group cDNA clone:J023082B02, full insert sequence /gb=AK111902
Ppa.22636
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_137259) mRNA, complete cds /cds=p(1,1161) /gb=XM_001771223
Vvi.12680
S1G00230 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G00230, mRNA sequence /clone=S1G00230 /gb=EE075516

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_211.13
DomainStartEndBit scoreE-value
zf-CCCH19021519.80.0037
RRM_135141818.10.0042

Sequences