Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_215.3

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_215.3
Family
HB
3D structure (top 5)
2R5Y 1FJL 2H1K 1UHS 1AU7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

477377 Score: 1

Arabidopsis thaliana

AT3G01470.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g49700.1 Score: 1

Sorghum bicolor

148717 Score: 1

Vitis vinifera

GSVIVP00020757001 Score: 1

Zea mays

GRMZM2G021339_P01 Score: 1
GRMZM2G143066_P01 Score: 1

Expression data

Expressed Sequence Tags

At.47815
Arabidopsis thaliana ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor (ATHB-1) mRNA, complete cds /cds=p(370,1188) /gb=NM_111013
Hv.1550
HV_CEa0018J07f Hordeum vulgare seedling green leaf EST library HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEa0018J07f, mRNA sequence /clone=HV_CEa0018J07f /gb=BF267675
Mtr.1376
MTYEC08TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV260809
Mtr.4475
EST647871 HOGA Medicago truncatula cDNA clone HOGA-33D17, mRNA sequence /clone=HOGA-33D17 /gb=CB895079
Os.56903
Oryza sativa Japonica Group cDNA clone:J023110A12, full insert sequence /gb=AK100634
Os.57545
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI205P01, full insert sequence /gb=CT830627
Ppa.10911
Physcomitrella patens subsp. patens predicted protein (Pphb7) mRNA, complete cds /cds=p(234,1265) /gb=XM_001753088
Vvi.17175
WIN0510.C21_K21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0510_K21 3', mRNA sequence /clone=WIN0510_K21 /clone_end=3' /gb=EC935875
Vvi.4667
WIN0812.C21_D17 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0812_D17 3', mRNA sequence /clone=WIN0812_D17 /clone_end=3' /gb=EC961661

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_215.3
DomainStartEndBit scoreE-value
Homeobox6511979.21.5e-20
HALZ12016474.63.6e-19

Sequences