Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_247.1

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_247.1
Family
HMG
3D structure (top 5)
2CO9 1GT0 2CS1 3F27 1HME
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

910356 Score: 1

Arabidopsis thaliana

AT5G23420.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g01100.1 Score: 1

Physcomitrella patens

95275 Score: 1

Populus trichocarpa

820147 Score: 1

Sorghum bicolor

5007288 Score: 1

Zea mays

GRMZM2G130182_P02 Score: 1

Expression data

Expressed Sequence Tags

At.31011
Arabidopsis thaliana HMGB6 (High mobility group B 6); transcription factor (HMGB6) mRNA, complete cds /cds=p(70,795) /gb=NM_122249
Hv.12035
BES1824108o12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone MPMGp2010O128 5-PRIME, mRNA sequence /clone=MPMGp2010O12108 /clone_end=5' /gb=CK124433
Pba.5004
WS01125.BR_B24 PT-P-FL-A-2 Populus trichocarpa cDNA clone WS01125_B24 5', mRNA sequence /clone=WS01125_B24 /clone_end=5' /gb=DT496978
Pth.5004
Populus trichocarpa clone WS01125_B24 unknown mRNA /cds=p(93,698) /gb=EF145475
Ptp.12876
T055A05.5pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T055A05 5', mRNA sequence /clone=T055A05 /clone_end=5' /gb=DN499397
Sbi.8108
OX1_63_H06.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_63_H06_A002 5', mRNA sequence /clone=OX1_63_H06_A002 /clone_end=5' /gb=CN138454 /gi=45972916
Vvi.15441
WIN1122.C21_C16 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1122_C16 3', mRNA sequence /clone=WIN1122_C16 /clone_end=3' /gb=EC984515

Domain Architecture

HMG_box PF00505 evm.TU.supercontig_247.1
DomainStartEndBit scoreE-value
HMG_box11117774.93e-19

Sequences