Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_254.4

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_254.4
Family
HB
3D structure (top 5)
1E3O 1AU7 3D1N 1B8I 2K40
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472599 Score: 1

Arabidopsis thaliana

AT1G23380.1 Score: 1
AT1G23380.2 Score: 0.985

Ostreococcus lucimarinus

5313 Score: 1

Ostreococcus tauri

10780 Score: 1

Carica papaya

evm.TU.supercontig_254.4 Score: 1
evm.TU.supercontig_48.160 Score: 1

Physcomitrella patens

145866 Score: 1

Populus trichocarpa

252159 Score: 1

Selaginella moellendorffii

415291 Score: 1

Vitis vinifera

GSVIVP00016046001 Score: 1

Expression data

Expressed Sequence Tags

At.10801
Arabidopsis thaliana STM (SHOOT MERISTEMLESS); transcription factor (STM) mRNA, complete cds /cds=p(1,1149) /gb=NM_104916
At.21162
A.thaliana mRNA for ATK1 protein /cds=p(97,1032) /gb=X81353
At.26286
Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds /cds=p(160,1143) /gb=BT002930
At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.26993
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence /gb=AK248600
Mtr.121
Medicago truncatula knotted class I homeodomain KNOX mRNA, complete cds /cds=p(10,1155) /gb=AF308454
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Os.151
Oryza sativa Japonica Group OSH1 mRNA for homeobox protein, complete cds /cds=p(1065,2150) /gb=D16507
Os.4162
Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence /cds=p(501,1436) /gb=AK111878
Os.4163
Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence /gb=AK241312
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Pth.3282
Populus trichocarpa clone WS01119_M04 unknown mRNA /cds=p(151,1008) /gb=EF144909
Ptp.6550
T022A11.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T022A11 3', mRNA sequence /clone=T022A11 /clone_end=3' /gb=DN489302
Sbi.13097
Sorghum bicolor KNOTTED1 homeodomain protein (KN1) mRNA, partial cds /cds=p(1,1044) /gb=DQ317417
Vvi.14039
WIN1116.C21_M09 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1116_M09 3', mRNA sequence /clone=WIN1116_M09 /clone_end=3' /gb=EC982719
Vvi.8600
WIN027.TB24.1_E07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_E07 3', mRNA sequence /clone=WIN027_E07 /clone_end=3' /gb=EC924955

Domain Architecture

KNOX1 PF03790 evm.TU.supercontig_254.4
DomainStartEndBit scoreE-value
KNOX16611089.71e-23
KNOX2118169106.49.5e-29
ELK20822935.62e-07
Homeobox231290-2.70.022

Sequences