Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_26.174

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_26.174
Family
HMG
3D structure (top 5)
1GT0 2CS1 3F27 1HME 1HRY
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

472304 Score: 1

Arabidopsis thaliana

AT1G20696.2 Score: 1

Coccomyxa sp. C-169

64336 Score: 1

Populus trichocarpa

642803 Score: 1

Selaginella moellendorffii

75453 Score: 1

Vitis vinifera

GSVIVP00002892001 Score: 1

Expression data

Expressed Sequence Tags

At.21298
Arabidopsis thaliana HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor (HMGB2) mRNA, complete cds /cds=p(187,621) /gb=NM_101920
At.27031
Arabidopsis thaliana HMGB3 (HIGH MOBILITY GROUP B 3); transcription factor (HMGB3) mRNA, complete cds /cds=p(183,608) /gb=NM_101921
Mtr.4125
EST644064 GESD Medicago truncatula cDNA clone GESD-29G17, mRNA sequence /clone=GESD-29G17 /gb=CA990556
Pba.2795
WS0165.B21_B02 PT-DX-A-7 Populus trichocarpa cDNA clone WS0165_B02 3', mRNA sequence /clone=WS0165_B02 /clone_end=3' /gb=CV226711
Pba.4003
M123F09 Populus flower cDNA library Populus trichocarpa cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU868909
Pba.906
WS02523.BR_M09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_M09 5', mRNA sequence /clone=WS02523_M09 /clone_end=5' /gb=DT478777
Pth.16408
WS01230.BR_P19 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01230_P19 5', mRNA sequence /clone=WS01230_P19 /clone_end=5' /gb=DT474146
Pth.906
Populus trichocarpa clone WS0116_C16 unknown mRNA /cds=p(138,572) /gb=EF146195
Ptp.11579
UL64PH10.5pR Populus cold stressed leaves cDNA library Populus tremula x Populus tremuloides cDNA clone UL64PH10 5', mRNA sequence /clone=UL64PH10 /clone_end=5' /gb=DN500585
Ptp.5369
A004P51.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A004P51 3', mRNA sequence /clone=A004P51 /clone_end=3' /gb=CK087349
Vvi.7970
VV_PEb17h09.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence /gb=EV235052
Vvi.8094
VV_PEd07c10.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242681

Domain Architecture

HMG_box PF00505 evm.TU.supercontig_26.174
DomainStartEndBit scoreE-value
HMG_box381071161.2e-31

Sequences