Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_26.22

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_26.22
Family
C3H
3D structure (top 5)
2VBC 1HEI 1HV8 1CU1 3FHT
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Expression data

Expressed Sequence Tags

At.36388
Arabidopsis thaliana RNA helicase, putative (AT2G47250) mRNA, complete cds /cds=p(64,2253) /gb=NM_130293
At.40132
Arabidopsis thaliana EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase (EMB2733/ESP3) mRNA, complete cds /cds=p(216,3350) /gb=NM_102984
At.46918
Arabidopsis thaliana ATP-dependent RNA helicase, putative (AT3G26560) mRNA, complete cds /cds=p(54,3560) /gb=NM_113564
At.4777
Arabidopsis thaliana RNA helicase, putative (AT3G62310) mRNA, complete cds /cds=p(171,2351) /gb=NM_116096
At.53041
Arabidopsis thaliana mRNA for putative pre-mRNA splicing factor RNA helicase, complete cds, clone: RAFL07-78-F08 /cds=p(114,3248) /gb=AK226760
At.66586
Arabidopsis thaliana RNA helicase, putative (AT4G16680) mRNA, complete cds /cds=p(1,2652) /gb=NM_117769
Hv.21076
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf46d20, mRNA sequence /gb=AK249534
Hv.5274
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf176l20, mRNA sequence /gb=AK248648
Os.18705
Oryza sativa Japonica Group cDNA clone:J013000K17, full insert sequence /cds=p(97,1791) /gb=AK064890
Os.50899
Oryza sativa (japonica cultivar-group) Os02g0301500 (Os02g0301500) mRNA, partial cds /cds=p(2,1642) /gb=NM_001053158
Os.55790
Oryza sativa Japonica Group cDNA clone:002-151-D04, full insert sequence /gb=AK108808
Os.59248
Oryza sativa (japonica cultivar-group) Os08g0335000 (Os08g0335000) mRNA, complete cds /cds=p(1,3393) /gb=NM_001068110
Os.6639
Oryza sativa Japonica Group cDNA clone:J023088B11, full insert sequence /gb=AK100422
Ppa.1384
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_176656) mRNA, complete cds /cds=p(332,2479) /gb=XM_001755495
Ppa.18660
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_227553) mRNA, complete cds /cds=p(1,2154) /gb=XM_001784811
Ppa.20235
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_131461) mRNA, partial cds /cds=p(1,2079) /gb=XM_001766943
Ppa.20725
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_180557) mRNA, complete cds /cds=p(1,3138) /gb=XM_001760441

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_26.22
DomainStartEndBit scoreE-value
zf-CCCH44246816.50.0099
S159266561.23.8e-15
Helicase_C1131122549.51.3e-11
DUF160512821382111.92.1e-30

Sequences