Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_27.2

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_27.2
Family
HB
3D structure (top 5)
2DJN 2R5Y 2ECB 2CRA 2H1K
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

473061 Score: 1

Arabidopsis thaliana

AT1G28420.1 Score: 1

Coccomyxa sp. C-169

82237 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g48820.1 Score: 1

Physcomitrella patens

67495 Score: 1

Populus trichocarpa

197907 Score: 1

Sorghum bicolor

5036401 Score: 1

Selaginella moellendorffii

447019 Score: 1

Vitis vinifera

GSVIVP00018645001 Score: 1

Zea mays

GRMZM2G122750_P01 Score: 1
GRMZM2G150413_P01 Score: 1

Expression data

Expressed Sequence Tags

At.27788
Arabidopsis thaliana HB-1 (homeobox-1); transcription factor (HB-1) mRNA, complete cds /cds=p(135,5252) /gb=NM_102610
Hv.16581
BJ473219 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal41c06 5', mRNA sequence /clone=baal41c06 /clone_end=5' /gb=BJ473219
Mtr.10193
EST305515 KV2 Medicago truncatula cDNA clone KV2-9O18, mRNA sequence /clone=KV2-9O18 /gb=AW257378
Os.6086
Oryza sativa Japonica Group cDNA clone:J023095K21, full insert sequence /gb=AK121237
Os.81796
SSHD126 Rice callus and differential tissue SSH library Oryza sativa cDNA, mRNA sequence /gb=CA923264
Vvi.5641
VV_PEd07e09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242727

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_27.2
DomainStartEndBit scoreE-value
Homeobox389481.72.6e-21
DDT55861799.31.3e-26

Sequences