Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_3.156

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_3.156
Family
Pseudo ARR-B
3D structure (top 5)
1K66 1W25 3C97 1DBW 2JBA
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

910487 Score: 1

Arabidopsis thaliana

AT5G24470.1 Score: 1

Ostreococcus lucimarinus

29755 Score: 1
41670 Score: 1

Ostreococcus tauri

23022 Score: 1

Populus trichocarpa

574629 Score: 1

Sorghum bicolor

5056377 Score: 1

Carica papaya

evm.TU.supercontig_193.15 Score: 1
evm.TU.supercontig_3.156 Score: 1

Expression data

Expressed Sequence Tags

At.1676
Arabidopsis thaliana APRR3 (PSEUDO-RESPONSE REGULATOR 3); transcription regulator (APRR3) mRNA, complete cds /cds=p(397,1884) /gb=NM_125403
Hv.21000
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf75k13, mRNA sequence /gb=AK250331
Mtr.16027
EST306017 KV2 Medicago truncatula cDNA clone KV2-11L8, mRNA sequence /clone=KV2-11L8 /gb=AW585322
Mtr.19448
MTYCY38TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV256565
Os.58539
Oryza sativa Japonica Group cDNA clone:J023077E22, full insert sequence /gb=AK121136
Os.59215
Oryza sativa Japonica Group cDNA clone:J013051N02, full insert sequence /gb=AK066112
Pba.9585
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Pth.1123
WS02516.B21.1_C04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02516_C04 3', mRNA sequence /clone=WS02516_C04 /clone_end=3' /gb=CV242823
Pth.16941
WS01229.BR_H11 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_H11 5', mRNA sequence /clone=WS01229_H11 /clone_end=5' /gb=DT473373
Ptp.2304
A012P36.3pR Hybrid aspen plasmid library Populus tremula x Populus tremuloides cDNA clone A012P36 3', mRNA sequence /clone=A012P36 /clone_end=3' /gb=CK087505
Sbi.10157
PIC1_53_A05.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence /gb=BM325806
Vvi.23600
CA12EI204IIF_C02 Cabernet Sauvignon Leaf - CA12EI Vitis vinifera cDNA clone CA12EI204IIF_C02 5', mRNA sequence /clone=CA12EI204IIF_C02 /clone_end=5' /gb=CA815595
Vvi.2987
WIN052.C21_I22 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_I22 3', mRNA sequence /clone=WIN052_I22 /clone_end=3' /gb=EC934856

Domain Architecture

Response_reg PF00072 evm.TU.supercontig_3.156
DomainStartEndBit scoreE-value
Response_reg5216693.76.6e-25
CCT584628883.4e-23

Sequences