Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_3.506

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_3.506
Family
LOB

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.22633
Arabidopsis thaliana LBD41 (LOB DOMAIN-CONTAINING PROTEIN 41) (LBD41) mRNA, complete cds /cds=p(349,1140) /gb=NM_111122
At.27200
Arabidopsis thaliana LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42) (LBD42) mRNA, complete cds /cds=p(152,853) /gb=NM_105522
Hv.16347
BNEL105b8 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL105b8 5' similar to P0520B06.17, mRNA sequence /clone=BNEL105b8 /clone_end=5' /gb=CV053964
Hv.16388
BNEL112c2 Barley EST endosperm library Hordeum vulgare subsp. vulgare cDNA clone BNEL112c2 5' similar to Oryza sativa, mRNA sequence /clone=BNEL112c2 /clone_end=5' /gb=CV054692
Hv.2321
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf116o06, mRNA sequence /gb=AK251426
Mtr.20524
METBB11TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY478176
Mtr.9079
EST484781 GVN Medicago truncatula cDNA clone pGVN-71M22 5' end, mRNA sequence /clone=pGVN-71M22 /clone_end=5' /gb=BG583039
Os.22577
Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN025N11, full insert sequence /gb=CT832350
Os.68370
Oryza sativa (japonica cultivar-group) Os01g0129600 (Os01g0129600) mRNA, complete cds /cds=p(1,924) /gb=NM_001048453
Pba.8936
WS02522.BR_C11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_C11 5', mRNA sequence /clone=WS02522_C11 /clone_end=5' /gb=DT478209
Pth.8936
Populus trichocarpa clone PX0011_J05 unknown mRNA /cds=p(90,980) /gb=EF144234
Sbi.10574
ABA1_2_C12.g1_A012 Abscisic acid-treated seedlings Sorghum bicolor cDNA clone ABA1_2_C12_A012 5', mRNA sequence /clone=ABA1_2_C12_A012 /clone_end=5' /gb=CB926601 /gi=30162872
Vvi.15596
WIN0818.C21_D13 Cab Sauv seed normalized (WIN08) Vitis vinifera cDNA clone WIN0818_D13 3', mRNA sequence /clone=WIN0818_D13 /clone_end=3' /gb=EC965471

Domain Architecture

DUF260 PF03195 evm.TU.supercontig_3.506
DomainStartEndBit scoreE-value
DUF26041091383e-38

Sequences