Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_33.185

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_33.185
Family
SET
3D structure (top 5)
2PB7 2R3A 1ML9 3F9X 2RFI
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

487281 Score: 1

Arabidopsis thaliana

AT1G73100.1 Score: 1

Chlorella sp. NC64A

142107 Score: 1

Coccomyxa sp. C-169

59484 Score: 1

Micromonas pusilla CCMP1545

62078 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g41172.1 Score: 1
LOC_Os05g41172.2 Score: 1

Physcomitrella patens

174853 Score: 1

Populus trichocarpa

415725 Score: 1

Sorghum bicolor

4873608 Score: 1

Selaginella moellendorffii

104841 Score: 1

Vitis vinifera

GSVIVP00023351001 Score: 1

Zea mays

GRMZM2G060478_P01 Score: 1

Chlamydomonas reinhardtii

6823 Score: 1

Expression data

Expressed Sequence Tags

At.8375
Arabidopsis thaliana SUVH1 (SUVH1) mRNA, complete cds /cds=p(363,2375) /gb=AF344444
Mtr.13736
EST648070 KV3 Medicago truncatula cDNA clone KV3-49K23, mRNA sequence /clone=KV3-49K23 /gb=CB891101
Os.3123
Oryza sativa Japonica Group cDNA clone:001-026-A12, full insert sequence /gb=AK059336
Os.97866
Oryza sativa Japonica Group cDNA clone:J033092A08, full insert sequence /cds=p(393,2834) /gb=AK102379
Vvi.14480
WIN1127.C21_D07 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1127_D07 3', mRNA sequence /clone=WIN1127_D07 /clone_end=3' /gb=EC986263

Domain Architecture

YDG_SRA PF02182 evm.TU.supercontig_33.185
DomainStartEndBit scoreE-value
YDG_SRA2393953421.2e-99
Pre-SET422522126.77.5e-35
SET524671135.91.2e-37

Sequences