Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_346.1

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_346.1
Family
C3H
3D structure (top 5)
1M9O 2CQE 2E5S 2D9N 2RHK
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

878662 Score: 1

Arabidopsis thaliana

AT1G04990.1 Score: 1
AT1G04990.2 Score: 1

Physcomitrella patens

14712 Score: 1

Populus trichocarpa

732336 Score: 1

Selaginella moellendorffii

45667 Score: 1

Vitis vinifera

GSVIVP00025958001 Score: 1

Chlamydomonas reinhardtii

421287 Score: 1

Expression data

Expressed Sequence Tags

Mtr.9480
EST484528 GVN Medicago truncatula cDNA clone pGVN-70P3 5' end, mRNA sequence /clone=pGVN-70P3 /clone_end=5' /gb=BG582782
Pba.10256
WS02533.B21_F09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_F09 3', mRNA sequence /clone=WS02533_F09 /clone_end=3' /gb=DT487304
Pth.10256
WS02533.B21_F09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_F09 3', mRNA sequence /clone=WS02533_F09 /clone_end=3' /gb=DT487304
Ptp.1654
T038E10 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU832817
Vvi.13491
CAB10004_IVa_Fa_H07 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10004_IVa_Fa_H07 5', mRNA sequence /clone=CAB10004_IVa_Fa_H07 /clone_end=5' /gb=CB970976
Vvi.19281
WIN0543.C21_B18 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0543_B18 3', mRNA sequence /clone=WIN0543_B18 /clone_end=3' /gb=EC947915

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_346.1
DomainStartEndBit scoreE-value
zf-CCCH487441.82.7e-09
zf-CCCH9111739.11.8e-08
zf-CCCH13616245.71.8e-10
zf-CCCH28531148.62.5e-11
zf-CCCH33135736.51e-07

Sequences