Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_365.4

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_365.4
Family
HMG
3D structure (top 5)
1GT0 1HME 3F27 2E6O 1CG7
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480649 Score: 1

Arabidopsis thaliana

AT2G17560.1 Score: 1
AT2G17560.2 Score: 1
AT2G17560.3 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g37910.1 Score: 1

Physcomitrella patens

19258 Score: 1
19259 Score: 1

Populus trichocarpa

818368 Score: 1

Sorghum bicolor

4748817 Score: 1

Vitis vinifera

GSVIVP00008729001 Score: 1

Zea mays

GRMZM2G081580_P03 Score: 1

Expression data

Expressed Sequence Tags

Mtr.4125
EST644064 GESD Medicago truncatula cDNA clone GESD-29G17, mRNA sequence /clone=GESD-29G17 /gb=CA990556
Os.57443
RECm1869 A normalized whole-life-cycle cDNA library of rice Oryza sativa (indica cultivar-group) cDNA clone BI155F22, BI147L21, DEVEPH09, BI149D02, BI113E08, EI085K18 5', mRNA sequence /clone=BI155F22,_BI147L21,_DEVEPH09,_BI149D02,_BI113E08, _EI085K18 /cl
Pba.906
WS02523.BR_M09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02523_M09 5', mRNA sequence /clone=WS02523_M09 /clone_end=5' /gb=DT478777
Pth.906
Populus trichocarpa clone WS0116_C16 unknown mRNA /cds=p(138,572) /gb=EF146195
Ptp.11579
UL64PH10.5pR Populus cold stressed leaves cDNA library Populus tremula x Populus tremuloides cDNA clone UL64PH10 5', mRNA sequence /clone=UL64PH10 /clone_end=5' /gb=DN500585
Vvi.7970
VV_PEb17h09.b1 Vitis vinifera cv. perlette LibB Vitis vinifera cDNA, mRNA sequence /gb=EV235052
Vvi.8094
VV_PEd07c10.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242681

Domain Architecture

HMG_box PF00505 evm.TU.supercontig_365.4
DomainStartEndBit scoreE-value
HMG_box38107107.73.9e-29

Sequences