Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_37.164

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_37.164
Family
CSD
3D structure (top 5)
3CAM 1H95 1MJC 1G6P 2K5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

556614 Score: 1

Selaginella moellendorffii

154869 Score: 1

Vitis vinifera

GSVIVP00036773001 Score: 1

Expression data

Expressed Sequence Tags

At.1680
45-L021843-065-003-A03S-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA clone 003-A03, mRNA sequence /clone=003-A03 /gb=DR750668
At.24348
glycine-rich protein {clone atGRP-2} [Arabidopsis thaliana, C24, mRNA, 965 nt] /cds=p(56,667) /gb=S47408
At.73207
Arabidopsis thaliana CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2); nucleic acid binding (CSDP2/GRP2) mRNA, complete cds /cds=p(332,943) /gb=NM_120029
Hv.22816
HVSMEn0005B12f Hordeum vulgare rachis EST library HVcDNA0015 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0005B12f, mRNA sequence /clone=HVSMEn0005B12f /gb=BI956744
Os.4724
Oryza sativa Japonica Group cDNA clone:J023061H10, full insert sequence /gb=AK070711
Os.54054
Oryza sativa Japonica Group cDNA, clone: J100044F18, full insert sequence /gb=AK243227
Ppa.15638
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_180264) mRNA, complete cds /cds=p(263,826) /gb=XM_001760093
Ppa.598
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_183211) mRNA, complete cds /cds=p(1,597) /gb=XM_001763837

Domain Architecture

CSD PF00313 evm.TU.supercontig_37.164
DomainStartEndBit scoreE-value
CSD773128.22.7e-35
zf-CCHC14916635.42.2e-07
zf-CCHC188205377.8e-08

Sequences