Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_370.10

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_370.10
Family
TRAF
3D structure (top 5)
1Y2A 2W3C 2JDQ 1JDH 2Z6G
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

134999 Score: 1

Coccomyxa sp. C-169

81096 Score: 1

Micromonas sp. RCC299

66240 Score: 1

Populus trichocarpa

205458 Score: 1

Chlamydomonas reinhardtii

398723 Score: 1

Expression data

Expressed Sequence Tags

At.20128
Arabidopsis thaliana armadillo/beta-catenin repeat family protein / BTB/POZ domain-containing protein (AT5G19330) mRNA, complete cds /cds=p(58,2190) /gb=NM_180521
At.28791
Arabidopsis thaliana unknown protein (At5g13060) mRNA, partial cds /cds=p(1,2211) /gb=AY074524
Cre.19064
Chlamydomonas reinhardtii predicted protein (CHLREDRAFT_140706) mRNA, partial cds /cds=p(1,1923) /gb=XM_001703649
Mtr.12877
AC0646 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615563
Mtr.13209
AC0629 NOLLY Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=DY615546
Os.7606
Oryza sativa (japonica cultivar-group) Os05g0398100 (Os05g0398100) mRNA, complete cds /cds=p(1,2259) /gb=NM_001062007
Ppa.18257
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106616) mRNA, complete cds /cds=p(1,2088) /gb=XM_001766720
Ppa.25996
CAYY30172.fwd CAYY Physcomitrella patens subsp. patens Villersexel - regular (H) Physcomitrella patens subsp. patens cDNA clone CAYY30172 5', mRNA sequence /clone=CAYY30172 /clone_end=5' /gb=FC356489
Ppa.6194
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_106476) mRNA, complete cds /cds=p(1,2097) /gb=XM_001765868
Vvi.24033
WIN052.C21_F19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN052_F19 3', mRNA sequence /clone=WIN052_F19 /clone_end=3' /gb=EC934792

Domain Architecture

Arm PF00514 evm.TU.supercontig_370.10
DomainStartEndBit scoreE-value
Arm13218028.33.1e-05
Arm18222240.18.7e-09
Arm22426438.52.7e-08
Arm26630619.60.013
Arm30834832.51.7e-06
HEAT31435019.10.019
Arm34938921.40.0038
BTB525633104.53.6e-28

Sequences