Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_39.98

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_39.98
Family
LOB

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

475666 Score: 1

Arabidopsis thaliana

AT1G65620.1 Score: 1
AT1G65620.2 Score: 1
AT1G65620.3 Score: 1
AT1G65620.4 Score: 1

Populus trichocarpa

656362 Score: 1
659394 Score: 1

Sorghum bicolor

4133891 Score: 1

Vitis vinifera

GSVIVP00009328001 Score: 1

Expression data

Expressed Sequence Tags

At.27203
Arabidopsis thaliana AS2 (ASYMMETRIC LEAVES 2) (AS2) mRNA, complete cds /cds=p(558,1157) /gb=NM_105235
At.28568
Arabidopsis thaliana LOB (LATERAL ORGAN BOUNDARIES) (LOB) mRNA, complete cds /cds=p(445,1005) /gb=NM_180923
At.28843
Arabidopsis thaliana ASL1 (LATERAL ORGAN BOUNDARIES domain gene 36) (ASL1) mRNA, complete cds /cds=p(318,1259) /gb=NM_126086
At.74385
Arabidopsis thaliana ASL4 mRNA for ASYMMETRIC LEAVES2-like 4 protein, complete cds /cds=p(290,850) /gb=AB473837
Os.18280
Oryza sativa Japonica Group cDNA clone:001-127-G05, full insert sequence /cds=p(296,1051) /gb=AK105527
Os.18459
Oryza sativa Japonica Group cDNA clone:002-117-B04, full insert sequence /cds=p(469,1278) /gb=AK119575
Os.82290
Oryza sativa (japonica cultivar-group) Os05g0417000 (Os05g0417000) mRNA, complete cds /cds=p(1,840) /gb=NM_001062094
Pba.1740
WS02510.B21_B24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_B24 3', mRNA sequence /clone=WS02510_B24 /clone_end=3' /gb=CV240709
Pba.9054
WS02521.B21_E04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_E04 3', mRNA sequence /clone=WS02521_E04 /clone_end=3' /gb=DT482959
Ppa.18639
CAYZ14192.fwd CAYZ Physcomitrella patens subsp. patens Villersexel - regular (L) Physcomitrella patens subsp. patens cDNA clone CAYZ14192 5', mRNA sequence /clone=CAYZ14192 /clone_end=5' /gb=FC383141
Pth.1740
WS02510.B21_B24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_B24 3', mRNA sequence /clone=WS02510_B24 /clone_end=3' /gb=CV240709
Pth.9054
WS02521.B21_E04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02521_E04 3', mRNA sequence /clone=WS02521_E04 /clone_end=3' /gb=DT482959
Sbi.5472
POL1_69_G11.g1_A002 Pollen Sorghum bicolor cDNA clone POL1_69_G11_A002 5', mRNA sequence /clone=POL1_69_G11_A002 /clone_end=5' /gb=CF481082 /gi=34509951

Domain Architecture

DUF260 PF03195 evm.TU.supercontig_39.98
DomainStartEndBit scoreE-value
DUF2608108244.72.2e-70

Sequences