Details for gene evm.TU.supercontig_46.92 - Plant Transcription Factor database

Species: Carica papaya Gene model evm.TU.supercontig_46.92 Family HB 3D structure (top 5) 2DMN 1X2N 1DU6 1B72 1MNM
	PDB entry:

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Physcomitrella patens

129619 Score: 1
59235 Score: 1

Carica papaya

evm.TU.supercontig_187.28 Score: 1
evm.TU.supercontig_46.92 Score: 1

Populus trichocarpa

417478 Score: 1
262862 Score: 0.956

At.20704: Arabidopsis thaliana KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription factor (KNAT5) mRNA, complete cds /cds=p(63,1214) /gb=NM_119356
At.5376: Arabidopsis thaliana KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3); transcription factor (KNAT3) mRNA, complete cds /cds=p(135,1430) /gb=NM_122431
At.5377: Arabidopsis thaliana At5g11060 mRNA for putative HOMEOBOX PROTEIN KNOTTED-1 LIKE 4 (KNAT4), complete cds, clone: RAFL19-58-H14 /cds=p(291,1472) /gb=AK118296
At.70104: Arabidopsis thaliana homeodomain transcription factor KNAT7 (KNAT7) mRNA, complete cds /cds=p(77,952) /gb=AF308451
Hv.18479: Hordeum vulgare knotted 7 (kn7) mRNA, complete cds /cds=p(78,1100) /gb=AF544051
Hv.23550: HV_CEb0001A05f Hordeum vulgare seedling green leaf EST library HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp. vulgare cDNA clone HV_CEb0001A05f, mRNA sequence /clone=HV_CEb0001A05f /gb=BE213693
Mtr.11825: Medicago truncatula class II KNOX homeobox transcription factor (KNOX5) mRNA, complete cds /cds=p(114,1229) /gb=EF128060
Mtr.13688: MTYER01TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EV262058
Mtr.14192: Medicago truncatula class II KNOX homeobox transcription factor (KNOX3) mRNA, complete cds /cds=p(229,1548) /gb=EF128058
Mtr.2602: Medicago truncatula class II KNOX homeobox transcription factor (KNOX4) mRNA, complete cds /cds=p(361,1239) /gb=EF128059
Os.1983: Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051K01, full insert sequence /gb=CT835439
Os.4164: Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds /cds=p(195,1139) /gb=AB061819
Os.4608: Oryza sativa Japonica Group HOS59 mRNA for KNOX family class 2 homeodomain protein, complete cds /cds=p(55,1008) /gb=AB061818
Os.5992: Oryza sativa Japonica Group cDNA clone:J013132C10, full insert sequence /gb=AK111645
Pba.1425: WS0252.B21_I21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_I21 3', mRNA sequence /clone=WS0252_I21 /clone_end=3' /gb=CV243677
Pba.1589: WS02514.B21.1_A11 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_A11 3', mRNA sequence /clone=WS02514_A11 /clone_end=3' /gb=CV242063
Ppa.26184: Physcomitrella patens subsp. patens KNOX class 2 protein MKN1-3 (MKN1-3) mRNA, complete cds /cds=p(1,1602) /gb=XM_001772671
Pth.15706: Populus trichocarpa clone PX0015_H02 unknown mRNA /cds=p(570,1475) /gb=EF144292
Pth.1589: WS0252.B21_I21 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0252_I21 3', mRNA sequence /clone=WS0252_I21 /clone_end=3' /gb=CV243677

Domain	Start	End	Bit score	E-value
KNOX1	100	144	66.5	9.9e-17
KNOX2	153	209	88.7	2.1e-23
ELK	265	286	31.3	4e-06

protein sequence
transcript sequence

Gene model: evm.TU.supercontig_46.92

Identification

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Physcomitrella patens

Carica papaya

Populus trichocarpa

Expression data

Expressed Sequence Tags

Domain Architecture

Sequences