Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_48.160

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_48.160
Family
HB
3D structure (top 5)
1X2N 2DMN 1B72 1DU6 1PUF
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Micromonas sp. RCC299

62285 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g19694.1 Score: 1

Ostreococcus tauri

10780 Score: 1

Carica papaya

evm.TU.supercontig_254.4 Score: 1
evm.TU.supercontig_48.160 Score: 1

Populus trichocarpa

240362 Score: 1

Sorghum bicolor

143200 Score: 1

Vitis vinifera

GSVIVP00022604001 Score: 1

Zea mays

GRMZM2G051366_P02 Score: 1
GRMZM2G094241_P01 Score: 1

Expression data

Expressed Sequence Tags

At.10801
Arabidopsis thaliana STM (SHOOT MERISTEMLESS); transcription factor (STM) mRNA, complete cds /cds=p(1,1149) /gb=NM_104916
At.21162
A.thaliana mRNA for ATK1 protein /cds=p(97,1032) /gb=X81353
At.26286
Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds /cds=p(160,1143) /gb=BT002930
Hv.26993
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf126d22, mRNA sequence /gb=AK248600
Mtr.121
Medicago truncatula knotted class I homeodomain KNOX mRNA, complete cds /cds=p(10,1155) /gb=AF308454
Os.4162
Oryza sativa Japonica Group cDNA clone:J033046I12, full insert sequence /cds=p(501,1436) /gb=AK111878
Os.4163
Oryza sativa Japonica Group cDNA, clone: J065141L09, full insert sequence /gb=AK241312
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Pth.3282
Populus trichocarpa clone WS01119_M04 unknown mRNA /cds=p(151,1008) /gb=EF144909
Ptp.6550
T022A11.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T022A11 3', mRNA sequence /clone=T022A11 /clone_end=3' /gb=DN489302
Vvi.20404
VV_PEd05f05.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV242359
Vvi.8600
WIN027.TB24.1_E07 Cab Sauv flower, leaf and root non-normalized (WIN02) Vitis vinifera cDNA clone WIN027_E07 3', mRNA sequence /clone=WIN027_E07 /clone_end=3' /gb=EC924955

Domain Architecture

KNOX1 PF03790 evm.TU.supercontig_48.160
DomainStartEndBit scoreE-value
KNOX16010485.71.7e-22
KNOX2113164102.51.4e-27
ELK21323435.71.8e-07
Homeobox236295-1.50.017

Sequences