Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_53.92

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_53.92
Family
Jumonji
3D structure (top 5)
2OX0 2W2I
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Chlorella sp. NC64A

21253 Score: 1

Micromonas sp. RCC299

99424 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g05680.1 Score: 1

Ostreococcus tauri

34223 Score: 1

Populus trichocarpa

666581 Score: 1

Sorghum bicolor

4995736 Score: 1

Expression data

Expressed Sequence Tags

At.10092
Arabidopsis thaliana ELF6 (EARLY FLOWERING 6); transcription factor (ELF6) mRNA, complete cds /cds=p(1,4023) /gb=NM_120506
At.3169
Arabidopsis thaliana REF6 (RELATIVE OF EARLY FLOWERING 6); transcription factor (REF6) mRNA, complete cds /cds=p(1,4083) /gb=NM_148863
Os.48706
Oryza sativa (japonica cultivar-group) Os12g0279100 (Os12g0279100) mRNA, complete cds /cds=p(164,4264) /gb=NM_001073104
Os.52727
Oryza sativa Japonica Group cDNA clone:J023001N18, full insert sequence /gb=AK068952
Ppa.20331
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_167193) mRNA, complete cds /cds=p(1,6099) /gb=XM_001771491

Domain Architecture

JmjN PF02375 evm.TU.supercontig_53.92
DomainStartEndBit scoreE-value
JmjN175066.69.3e-17
JmjC324443173.75.1e-49

Sequences