Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_55.149

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_55.149
Family
HSF
3D structure (top 5)
1HKS 3HTS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

490909 Score: 1

Arabidopsis thaliana

AT4G36990.1 Score: 1

Physcomitrella patens

130937 Score: 1

Populus trichocarpa

218690 Score: 1

Selaginella moellendorffii

25564 Score: 1

Vitis vinifera

GSVIVP00019488001 Score: 1

Expression data

Expressed Sequence Tags

At.49954
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB79ZF11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX814533
At.5365
Arabidopsis thaliana HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor (HSF4) mRNA, complete cds /cds=p(484,1338) /gb=NM_119862
At.5973
Arabidopsis thaliana AT-HSFB2A (Arabidopsis thaliana heat shock transcription factor B2A); DNA binding / transcription factor (AT-HSFB2A) mRNA, complete cds /cds=p(124,1023) /gb=NM_125595
Mtr.13459
Medicago truncatula clone MTYFH_FI_FJ_FK1G-P-2 unknown mRNA /cds=m(83,829) /gb=BT052747
Mtr.8663
Medicago truncatula clone MTYFL_FM_FN_FO1G-M-13 unknown mRNA /cds=p(142,1221) /gb=BT053195
Os.27716
Oryza sativa (japonica cultivar-group) Os08g0546800 (Os08g0546800) mRNA, complete cds /cds=p(6,1856) /gb=NM_001068958
Pba.10851
WS01226.BR_I21 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01226_I21 5', mRNA sequence /clone=WS01226_I21 /clone_end=5' /gb=DT472578
Pba.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Pth.367
Populus trichocarpa clone WS0125_K14 unknown mRNA /cds=p(145,1251) /gb=EF147879
Pth.5303
WS02553.C21_E01 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02553_E01 3', mRNA sequence /clone=WS02553_E01 /clone_end=3' /gb=DT493055
Vvi.7306
WIN1028.C21_E01 Muscat Hamburg post-veraison pericarp normalized (WIN10) Vitis vinifera cDNA clone WIN1028_E01 3', mRNA sequence /clone=WIN1028_E01 /clone_end=3' /gb=EC975464

Domain Architecture

HSF_DNA-bind PF00447 evm.TU.supercontig_55.149
DomainStartEndBit scoreE-value
HSF_DNA-bind7204190.45.1e-54

Sequences