Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_56.12

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_56.12
Family
Sigma70-like
3D structure (top 5)
1SIG 1L0O 1L9Z 2A6H 1RP3
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

482682 Score: 1

Arabidopsis thaliana

AT2G36990.1 Score: 1

Cyanidioschyzon merolae

CMQ213C Score: 1

Coccomyxa sp. C-169

18553 Score: 1

Micromonas pusilla CCMP1545

47508 Score: 1

Micromonas sp. RCC299

100150 Score: 1

Ostreococcus lucimarinus

41331 Score: 1

Oryza sativa subsp. japonica

LOC_Os08g14450.1 Score: 1

Ostreococcus tauri

18021 Score: 1

Physcomitrella patens

206687 Score: 1

Populus trichocarpa

809851 Score: 1

Sorghum bicolor

4866801 Score: 1

Vitis vinifera

GSVIVP00023225001 Score: 1

Zea mays

GRMZM2G144196_P02 Score: 1
GRMZM2G144196_P03 Score: 1

Expression data

Expressed Sequence Tags

At.1453
Arabidopsis thaliana SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcription factor (SIGF) mRNA, complete cds /cds=p(124,1767) /gb=NM_129255
Pba.2302
WS02548.C21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_D22 3', mRNA sequence /clone=WS02548_D22 /clone_end=3' /gb=DT491608
Pth.2302
WS02548.C21_D22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_D22 3', mRNA sequence /clone=WS02548_D22 /clone_end=3' /gb=DT491608
Vvi.2744
WIN0529.C21_I24 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0529_I24 3', mRNA sequence /clone=WIN0529_I24 /clone_end=3' /gb=EC943674

Domain Architecture

Sigma70_r2 PF04542 evm.TU.supercontig_56.12
DomainStartEndBit scoreE-value
Sigma70_r232839880.18.1e-21
Sigma70_r340248461.53.1e-15
Sigma70_r449654989.11.5e-23

Sequences