Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_6.10

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_6.10
Family
MYB-related
3D structure (top 5)
1HST 1UST 1UHM 1USS 1GHC
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

332814 Score: 1

Arabidopsis thaliana

AT5G67580.1 Score: 1
AT5G67580.2 Score: 1

Oryza sativa subsp. japonica

LOC_Os01g40670.1 Score: 1
LOC_Os01g40670.2 Score: 1

Populus trichocarpa

807195 Score: 1

Sorghum bicolor

4868619 Score: 1

Vitis vinifera

GSVIVP00004199001 Score: 1

Zea mays

GRMZM2G095239_P01 Score: 1

Expression data

Expressed Sequence Tags

At.26646
Arabidopsis thaliana telomere repeat binding factor 3 (TRB3) mRNA, complete cds /cds=p(221,1108) /gb=U83839
At.7636
Arabidopsis thaliana ATTRB2/TRB2 (TELOMERE REPEAT BINDING FACTOR 2); DNA binding / transcription factor (ATTRB2/TRB2) mRNA, complete cds /cds=p(255,1154) /gb=NM_180955
Mtr.17478
METB235TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY477379
Vvi.8843
WIN0517.C21_L21 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0517_L21 3', mRNA sequence /clone=WIN0517_L21 /clone_end=3' /gb=EC939798

Domain Architecture

Myb_DNA-binding PF00249 evm.TU.supercontig_6.10
DomainStartEndBit scoreE-value
Myb_DNA-binding55322.70.0015
Linker_histone11618223.34.3e-06

Sequences