Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_6.130

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_6.130
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Oryza sativa subsp. japonica

LOC_Os02g47640.1 Score: 1

Vitis vinifera

GSVIVP00014597001 Score: 1

Expression data

Expressed Sequence Tags

At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
Hv.20027
HVSMEa0021I18f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare cDNA clone HVSMEa0021I18f, mRNA sequence /clone=HVSMEa0021I18f /gb=BG299720
Mtr.13296
EST648312 KV3 Medicago truncatula cDNA clone KV3-49N18, mRNA sequence /clone=KV3-49N18 /gb=CB891343
Os.51217
Oryza sativa Japonica Group cDNA clone:J033074D16, full insert sequence /gb=AK101936
Pba.2402
WS0193.B21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_E06 3', mRNA sequence /clone=WS0193_E06 /clone_end=3' /gb=CV231007
Pba.4084
WS02528.BR_C13 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_C13 5', mRNA sequence /clone=WS02528_C13 /clone_end=5' /gb=DT480179
Pth.12380
WS0194.B21_M16 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0194_M16 3', mRNA sequence /clone=WS0194_M16 /clone_end=3' /gb=CV231522
Pth.2402
WS0193.B21_E06 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0193_E06 3', mRNA sequence /clone=WS0193_E06 /clone_end=3' /gb=CV231007
Ptp.2238
T024G11 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence /clone_end=5' /gb=BU831713
Sbi.10417
EM1_69_E08.g1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence /gb=BG464414
Vvi.16413
CAbud0007_IIF_H02 Vitis vinifera cv. cabernet sauvignon (Clone 8) Bud - CABUD Vitis vinifera cDNA clone CAbud0007_IIF_H02 5', mRNA sequence /clone=CAbud0007_IIF_H02 /clone_end=5' /gb=CF513707

Domain Architecture

F-box PF00646 evm.TU.supercontig_6.130
DomainStartEndBit scoreE-value
F-box449930.66.5e-06
Tub110335267.82.5e-77

Sequences