Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_6.209

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_6.209
Family
C3H
3D structure (top 5)
2BZE 1V32 2Z5S 1UHR 1V31
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

906461 Score: 1

Arabidopsis thaliana

AT2G18090.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os09g36090.1 Score: 1

Populus trichocarpa

219537 Score: 1

Vitis vinifera

GSVIVP00036834001 Score: 1

Zea mays

GRMZM2G078379_P01 Score: 1

Expression data

Expressed Sequence Tags

At.40269
Arabidopsis thaliana SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein (AT2G16480) mRNA, complete cds /cds=p(1,1152) /gb=NM_127201
At.858
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT3G51120) mRNA, complete cds /cds=p(310,4002) /gb=NM_114972
Hv.25150
BJ471970 K. Sato unpublished cDNA library, cv. Haruna Nijo adult, heading stage top three leaves Hordeum vulgare subsp. vulgare cDNA clone baal28n18 5', mRNA sequence /clone=baal28n18 /clone_end=5' /gb=BJ471970
Mtr.13307
EST647475 HOGA Medicago truncatula cDNA clone HOGA-32C15, mRNA sequence /clone=HOGA-32C15 /gb=CB894683
Os.78568
Oryza sativa (japonica cultivar-group) Os10g0511800 (Os10g0511800) mRNA, complete cds /cds=p(1,2118) /gb=NM_001071576
Os.86087
NEW_RNG123-D03 Rice mixture of leaf, root, panicle Oryza sativa (japonica cultivar-group) cDNA, mRNA sequence /gb=EE590805
Os.96422
SSH001438 Salt stress SSH library Oryza sativa (indica cultivar-group) cDNA, mRNA sequence /gb=EX451381

Domain Architecture

SWIB PF02201 evm.TU.supercontig_6.209
DomainStartEndBit scoreE-value
SWIB326401791.7e-20
Plus-3465572176.11e-49
zf-CCCH1049107315.50.014

Sequences