Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_6.256

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_6.256
Family
CSD
3D structure (top 5)
1H95 1MJC 1C9O 2K5N 2KCM
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

480687 Score: 1
491032 Score: 1

Arabidopsis thaliana

AT2G17870.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os02g02870.1 Score: 1

Physcomitrella patens

180264 Score: 1

Populus trichocarpa

796697 Score: 1

Sorghum bicolor

5003468 Score: 1

Selaginella moellendorffii

186937 Score: 1

Carica papaya

evm.TU.supercontig_36.18 Score: 1
evm.TU.supercontig_6.256 Score: 1

Zea mays

GRMZM2G090076_P01 Score: 1
GRMZM2G179385_P01 Score: 1

Expression data

Expressed Sequence Tags

At.19464
Arabidopsis thaliana cold-shock DNA-binding family protein (AT2G17870) mRNA, complete cds /cds=p(50,955) /gb=NM_127341

Domain Architecture

CSD PF00313 evm.TU.supercontig_6.256
DomainStartEndBit scoreE-value
CSD673127.54.4e-35
zf-CCHC102119383.7e-08
zf-CCHC13815531.82.7e-06
zf-CCHC16618330.34.8e-06
zf-CCHC19421130.25.1e-06
zf-CCHC21823537.84.2e-08

Sequences