Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_69.80

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_69.80
Family
HB
3D structure (top 5)
1X2N 1PUF 2DMN 1B72 2K40
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

INPARANOID could not detect any orthologs for this gene model

Expression data

Expressed Sequence Tags

At.21162
A.thaliana mRNA for ATK1 protein /cds=p(97,1032) /gb=X81353
At.26286
Arabidopsis thaliana clone RAFL14-89-I21 (R20256) putative homeodomain transcription factor KNAT6 (At1g23380) mRNA, complete cds /cds=p(160,1143) /gb=BT002930
At.28060
Arabidopsis thaliana KNAT1 (BREVIPEDICELLUS 1); transcription factor (KNAT1) mRNA, complete cds /cds=p(357,1553) /gb=NM_116884
Hv.12878
Hordeum vulgare knotted 1 (kn1) mRNA, complete cds /cds=p(35,1084) /gb=AF544045
Mtr.7182
Medicago truncatula class I KNOX homeobox transcription factor (KNOX2) mRNA, partial cds /cds=p(1,868) /gb=EF128057
Pth.17230
WS01223.B21_N06 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01223_N06 3', mRNA sequence /clone=WS01223_N06 /clone_end=3' /gb=CV236360
Ptp.6550
T022A11.3pR Populus shoot meristem cDNA library Populus tremula x Populus tremuloides cDNA clone T022A11 3', mRNA sequence /clone=T022A11 /clone_end=3' /gb=DN489302
Vvi.14039
WIN1116.C21_M09 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1116_M09 3', mRNA sequence /clone=WIN1116_M09 /clone_end=3' /gb=EC982719
Vvi.16658
VV_PEd0017e09.b1 Vitis vinifera cv. perlette LibD Vitis vinifera cDNA, mRNA sequence /gb=EV241384
Vvi.20507
WIN0519.C21_M19 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0519_M19 3', mRNA sequence /clone=WIN0519_M19 /clone_end=3' /gb=EC940481

Domain Architecture

ELK PF03789 evm.TU.supercontig_69.80
DomainStartEndBit scoreE-value
ELK396026.40.00012
Homeobox621210.50.011

Sequences