Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_7.138

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_7.138
Family
HB
3D structure (top 5)
2DMT 1B8I 2H1K 2R5Y 1NK2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis thaliana

AT1G73360.1 Score: 1

Oryza sativa subsp. japonica

LOC_Os06g10600.1 Score: 1

Populus trichocarpa

784120 Score: 1

Vitis vinifera

GSVIVP00000869001 Score: 1

Zea mays

GRMZM2G145690_P01 Score: 1

Expression data

Expressed Sequence Tags

At.15827
Arabidopsis thaliana At1g17920/F2H15_22 mRNA, complete cds /cds=p(350,1570) /gb=AF424554
At.19179
Arabidopsis thaliana homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (AT1G05230) mRNA, complete cds /cds=p(316,2481) /gb=NM_179265
At.24442
Arabidopsis thaliana ANL2 (ANTHOCYANINLESS 2) (ANL2) mRNA, complete cds /cds=p(406,2118) /gb=NM_001125435
At.2706
Arabidopsis thaliana ATML1 (MERISTEM LAYER 1); DNA binding (ATML1) mRNA, complete cds /cds=p(467,2755) /gb=NM_001036615
At.34997
Arabidopsis thaliana HDG11 (HOMEODOMAIN GLABROUS11); DNA binding / transcription factor (HDG11) mRNA, complete cds /cds=p(702,2870) /gb=NM_105996
At.4047
Arabidopsis thaliana PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor (PDF2) mRNA, complete cds /cds=p(449,2680) /gb=NM_116727
Hv.26642
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf24d09, mRNA sequence /gb=AK249246
Os.20576
Oryza sativa Japonica Group cDNA, clone: J075197C04, full insert sequence /gb=AK318563

Domain Architecture

Homeobox PF00046 evm.TU.supercontig_7.138
DomainStartEndBit scoreE-value
Homeobox248080.94.6e-21
START222444216.47.5e-62

Sequences