Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_75.53

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_75.53
Family
C3H
3D structure (top 5)
1M9O 2D9N 2E5S 2RPP 2CQE
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479452 Score: 1

Arabidopsis thaliana

AT3G19360.1 Score: 1

Populus trichocarpa

557115 Score: 1

Vitis vinifera

GSVIVP00016857001 Score: 1

Expression data

Expressed Sequence Tags

At.22994
Arabidopsis thaliana zinc finger (CCCH-type) family protein (AT3G19360) mRNA, complete cds /cds=p(59,1219) /gb=NM_112823
Pba.1354
WS0253.B21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_H24 3', mRNA sequence /clone=WS0253_H24 /clone_end=3' /gb=CV244018
Pth.1354
WS0253.B21_H24 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0253_H24 3', mRNA sequence /clone=WS0253_H24 /clone_end=3' /gb=CV244018

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_75.53
DomainStartEndBit scoreE-value
zf-CCCH376235.91.6e-07
zf-CCCH9712327.65.2e-05
zf-CCCH17720340.56.8e-09

Sequences