Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_77.11

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_77.11
Family
TUB
3D structure (top 5)
2FIM 3C5N
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

892366 Score: 1

Arabidopsis thaliana

AT1G53320.1 Score: 1

Chlorella sp. NC64A

28000 Score: 1

Oryza sativa subsp. japonica

LOC_Os05g43850.1 Score: 1

Populus trichocarpa

811813 Score: 1

Sorghum bicolor

4768598 Score: 1

Zea mays

GRMZM2G134775_P01 Score: 1

Expression data

Expressed Sequence Tags

At.21504
Arabidopsis thaliana AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor (AtTLP2) mRNA, complete cds /cds=p(479,1663) /gb=NM_001036292
At.24299
Arabidopsis thaliana AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor (AtTLP7) mRNA, complete cds /cds=p(76,1215) /gb=NM_104210
At.27566
Arabidopsis thaliana putative tubby protein (At2g47900) mRNA, complete cds /cds=p(455,1675) /gb=AY074273
Mtr.13388
META224TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=EY474143
Os.10160
Oryza sativa (japonica cultivar-group) Os05g0514300 (Os05g0514300) mRNA, complete cds /cds=p(246,1364) /gb=NM_001062568
Os.21061
Oryza sativa (japonica cultivar-group) Os07g0667000 (Os07g0667000) mRNA, complete cds /cds=p(247,1467) /gb=NM_001067107
Os.22785
Oryza sativa Japonica Group cDNA clone:J023048A08, full insert sequence /cds=p(114,1184) /gb=AK070401
Os.31726
Oryza sativa Japonica Group cDNA clone:002-118-B03, full insert sequence /cds=p(68,1174) /gb=AK106853
Os.80328
Oryza sativa (japonica cultivar-group) Os05g0560400 (Os05g0560400) mRNA, complete cds /cds=p(1,1059) /gb=NM_001062843
Ppa.17533
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_190792) mRNA, complete cds /cds=p(1,1287) /gb=XM_001772550
Ppa.6953
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_221905) mRNA, complete cds /cds=p(1,1278) /gb=XM_001777454
Pth.11141
Populus trichocarpa clone WS01217_E07 unknown mRNA /cds=p(196,1374) /gb=EF146852
Vvi.6639
WIN035.C21_E09 Cab Sauv seed normalized (WIN03) Vitis vinifera cDNA clone WIN035_E09 3', mRNA sequence /clone=WIN035_E09 /clone_end=3' /gb=EC928480

Domain Architecture

F-box PF00646 evm.TU.supercontig_77.11
DomainStartEndBit scoreE-value
F-box4710225.80.00018
Tub113372379.94.6e-111

Sequences