Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_84.104

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_84.104
Family
Rcd1-like
3D structure (top 5)
2FV2
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

479606 Score: 1

Arabidopsis thaliana

AT3G20800.1 Score: 1

Cyanidioschyzon merolae

CMJ164C Score: 1

Chlorella sp. NC64A

140433 Score: 1

Coccomyxa sp. C-169

40878 Score: 1

Micromonas pusilla CCMP1545

49542 Score: 1

Micromonas sp. RCC299

60639 Score: 1

Ostreococcus lucimarinus

31046 Score: 1

Oryza sativa subsp. japonica

LOC_Os03g57130.1 Score: 1

Physcomitrella patens

203554 Score: 1

Populus trichocarpa

805875 Score: 1
829875 Score: 0.96

Sorghum bicolor

5057851 Score: 1

Selaginella moellendorffii

174818 Score: 1

Vitis vinifera

GSVIVP00027280001 Score: 1

Zea mays

GRMZM2G045331_P01 Score: 1
GRMZM2G045331_P05 Score: 1
GRMZM2G045331_P06 Score: 1
GRMZM2G140552_P01 Score: 1
GRMZM2G140552_P04 Score: 1

Chlamydomonas reinhardtii

137355 Score: 1

Expression data

Expressed Sequence Tags

At.19618
Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS20ZA01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) /gb=BX830756
At.48685
Arabidopsis thaliana putative cell differentiation protein (At3g20800) mRNA, complete cds /cds=p(48,998) /gb=AY091082
Cre.2378
Chlamydomonas reinhardtii Rcd1-like protein (RCD1) mRNA, complete cds /cds=p(291,1190) /gb=XM_001694007
Hv.13912
AL508730 Hordeum vulgare Barke developing caryopsis (3.-15.DAP) Hordeum vulgare subsp. vulgare cDNA clone HY09K03V 5', mRNA sequence /clone=HY09K03 /clone_end=5' /gb=AL508730
Hv.24291
Hordeum vulgare subsp. vulgare cDNA clone: FLbaf165j19, mRNA sequence /gb=AK252610
Hv.6986
HVSMEk0011I03f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA clone HVSMEk0011I03f, mRNA sequence /clone=HVSMEk0011I03f /gb=BI960772
Mtr.12183
MEUBB21TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence /clone_end=5' /gb=GE347784
Os.31773
Oryza sativa Japonica Group cDNA clone:002-115-H08, full insert sequence /gb=AK106782
Os.33061
Oryza sativa Japonica Group cDNA clone:J033071K05, full insert sequence /gb=AK101921
Os.76830
Oryza sativa Japonica Group cDNA, clone: J075183G10, full insert sequence /gb=AK242259
Ppa.3625
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_224039) mRNA, complete cds /cds=p(1,870) /gb=XM_001780269
Ppa.6891
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_203554) mRNA, complete cds /cds=p(249,1127) /gb=XM_001754879
Sbi.11721
DG1_126_D12.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence /gb=BE356585

Domain Architecture

Rcd1 PF04078 evm.TU.supercontig_84.104
DomainStartEndBit scoreE-value
Rcd1412724497e-132

Sequences