Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_84.24

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_84.24
Family
C3H
3D structure (top 5)
2E5G 3D2W 1WF0 2JVO 2DGS
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Populus trichocarpa

722961 Score: 1

Vitis vinifera

GSVIVP00022218001 Score: 1

Carica papaya

evm.TU.supercontig_197.21 Score: 1
evm.TU.supercontig_84.24 Score: 1

Zea mays

GRMZM2G003424_P02 Score: 1
GRMZM2G086614_P01 Score: 1
GRMZM2G093721_P01 Score: 1
GRMZM2G086614_P02 Score: 0.993
GRMZM2G093721_P02 Score: 0.993

Expression data

Expressed Sequence Tags

At.33921
Arabidopsis thaliana RNA binding (AT3G63450) mRNA, complete cds /cds=p(1,1215) /gb=NM_116210
Hv.9817
HVSMEg0017F10f Hordeum vulgare pre-anthesis spike EST library HVcDNA0008 (white to yellow anther) Hordeum vulgare subsp. vulgare cDNA clone HVSMEg0017F10f, mRNA sequence /clone=HVSMEg0017F10f /gb=BE455906
Pba.6544
WS02542.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_G18 3', mRNA sequence /clone=WS02542_G18 /clone_end=3' /gb=DT489508
Pth.12941
F101P95.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F101P95 5', mRNA sequence /clone=F101P95 /clone_end=5' /gb=CK101595
Pth.6544
WS02542.B21_G18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_G18 3', mRNA sequence /clone=WS02542_G18 /clone_end=3' /gb=DT489508
Vvi.12680
S1G00230 Fruits and flowers treated with GA3 (VvS1) Vitis vinifera cDNA clone S1G00230, mRNA sequence /clone=S1G00230 /gb=EE075516
Vvi.13513
CAB10006_IIIa_Fa_F02 Cabernet Sauvignon Flower Pre-bloom - CAB1 Vitis vinifera cDNA clone CAB10006_IIIa_Fa_F02 5', mRNA sequence /clone=CAB10006_IIIa_Fa_F02 /clone_end=5' /gb=CB971846
Vvi.21387
WIN1125.C21_D19 Muscat Hamburg pre-veraison berry normalized (WIN11) Vitis vinifera cDNA clone WIN1125_D19 3', mRNA sequence /clone=WIN1125_D19 /clone_end=3' /gb=EC985581
Vvi.22399
WIN0523.C21_N12 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0523_N12 3', mRNA sequence /clone=WIN0523_N12 /clone_end=3' /gb=EC941824

Domain Architecture

zf-CCCH PF00642 evm.TU.supercontig_84.24
DomainStartEndBit scoreE-value
zf-CCCH23025528.72.4e-05

Sequences