Plant Transcription factor database - Universität Potsdam
version: 3.0

Gene model: evm.TU.supercontig_87.14

Identification

Species:
Carica papaya
Gene model
evm.TU.supercontig_87.14
Family
SET
3D structure (top 5)
2R3A 2RFI 1ML9 3H6L 1MVH
PDB entry:

Genome Databases

Orthologs and co-orthologs (in-paralogs)

Look for sequence homologs using SIMAP@MIPS

SIMAP

Ortholog identification by INPARANOID

Arabidopsis lyrata

494600 Score: 1

Arabidopsis thaliana

AT5G43990.2 Score: 1.002
AT5G43990.1 Score: 1
AT5G43990.3 Score: 1
AT5G43990.4 Score: 1

Populus trichocarpa

243333 Score: 1

Sorghum bicolor

5058868 Score: 1

Vitis vinifera

GSVIVP00028515001 Score: 1

Zea mays

GRMZM2G061709_P01 Score: 1
GRMZM2G016901_P01 Score: 0.995

Expression data

Expressed Sequence Tags

At.26569
Arabidopsis thaliana mRNA for SET domain protein SUVR2, complete cds, clone: RAFL26-05-B10 /cds=p(244,2397) /gb=AK230468
Ppa.19113
Physcomitrella patens subsp. patens predicted protein (PHYPADRAFT_3159) mRNA, partial cds /cds=p(1,966) /gb=XM_001785757
Vvi.20659
WIN0534.C21_N01 Cab Sauv flower, leaf and root normalized (WIN05) Vitis vinifera cDNA clone WIN0534_N01 3', mRNA sequence /clone=WIN0534_N01 /clone_end=3' /gb=EC945442

Domain Architecture

Pre-SET PF05033 evm.TU.supercontig_87.14
DomainStartEndBit scoreE-value
Pre-SET518666199.8e-06
SET66879682.81.2e-21

Sequences